Focused panel sequencing points to genetic predisposition in non-cirrhotic intrahepatic portal hypertension patients in India.
- Wellcome Trust Research Laboratory, Division of GI Sciences, Christian Medical College, Vellore, 632 004, India.
- Department of Endocrinology, Christian Medical College, Vellore, 632 004, India.
- Department of Hepatology, Christian Medical College, Vellore, 632 004, India.
- Department of Pathology, Christian Medical College, Vellore, 632 004, India.
- Department of Transfusion Medicine and Immuno-Haematology, Christian Medical College, Vellore, 632 004, India.
- Department of Microbiology, Christian Medical College, Vellore, 632 004, India.
- Department of Pathology, SRM Institutes for Medical Science, Chennai, 600 083, India.
- Department of Hepatology, Christian Medical College, Vellore, 632 004, India. drashishgoel@cmcvellore.ac.in.
Indian journal of gastroenterology : official journal of the Indian Society of Gastroenterology Vol. 43 · Issue 2 · pp. 434-442
PMID 37796423 DOI 10.1007/s12664-023-01454-5
Cite This Article
Rekha Aaron, Kalpana Premkumar, Aaron Chapla, B Vijayalekshmi, Uday Zachariah, Elwyn Elias, Thomas Alex Kodiatte, Dolly Daniel, John Jude, K A Balasubramanian, Sukesh C Nair, Nihal Thomas, Banumathi Ramakrishna, C E Eapen, Ashish Goel. Focused panel sequencing points to genetic predisposition in non-cirrhotic intrahepatic portal hypertension patients in India. Indian journal of gastroenterology : official journal of the Indian Society of Gastroenterology. 2024;43(2):434-442. doi:10.1007/s12664-023-01454-5
Abstract
OBJECTIVE: Non-cirrhotic intrahepatic portal hypertension (NCIPH), a portal microangiopathy affecting small portal vein radicles, is a disease of Indian sub-continent. NCIPH appears to be a complex disease with interactions between inherited and acquired factors, though the exact pathophysiological mechanism is unknown. We aimed at investigating the genetic variants that might contribute to susceptibility to NCIPH.
METHODS: In this case-control study, we analyzed genes associated with microangiopathy-VWF-ADAMTS13 (von Willebrand factor and its cleavase enzyme - a disintegrin and matrix metalloprotease with thrombospondin type-1 motifs member 13) and alternative complement system vitamin B metabolism and with familial NCIPH.
RESULT: Eighty-four Indian patients with liver biopsy-proven NCIPH (cases) and 103 healthy controls (matched for residential region of India) were included in the study. Targeted next-generation sequencing (NGS) panel, comprising 11 genes of interest, was done on 54 cases. Genotyping of selected variants was performed in 84 cases and 103 healthy controls. We identified variants in MBL2, CD46 and VWF genes either associated or predisposing to NCIPH. We also identified a single case with a novel compound heterozygous mutation in MBL2 gene, possibly contributing to development of NCIPH.
CONCLUSION: In this first of a kind comprehensive gene panel study, multiple variants of significance have been noted, especially in ADAMTS13-VWF and complement pathways in NCIPH patients in India. Functional significance of these variants needs to be further studied.
Keywords
- ADAMTS13
- MBL2
- NCIPH
- Targeted panel
- VWF
- Variants




